[paludis-sekrit] [Paludis] #782: Some python packages are not being built

Paludis trac at pioto.org
Wed Aug 12 17:40:51 UTC 2009


#782: Some python packages are not being built
-----------------------------+----------------------------------------------
 Reporter:  marsclic         |          Owner:        
     Type:  defect           |         Status:  new   
 Priority:  Sometime         |      Milestone:        
Component:  clients/paludis  |        Version:  0.38.2
 Keywords:                   |      Blockedby:        
 Blocking:                   |   Distribution:  Gentoo
-----------------------------+----------------------------------------------
 A few days ago I noticed that some python packages in my PC at work ( a
 Core2 x86_64 ) are not building anymore. My home PC however does not show
 the same problem ( a Dual-dual Opteron x86_64 as well).

 I attached the output of trying to build the pyrex package, but many other
 packages show the same problem. Please notice the "python." invocation
 which is the source of the error:
 ============================
 ...
 >> Done builtin_loadenv
 >>> Starting src_compile
 * Building of dev-python/pyrex-0.9.8.5-r1 with Python ....
 python. setup.py build -b build-.
 /var/tmp/paludis/dev-python-pyrex-0.9.8.5-r1/temp/loadsaveenv: line 1209:
 python.: command not found

 !!! ERROR in dev-python/pyrex-0.9.8.5-r1:
 !!! In python_execute_function at line 4050
 !!! Building failed with Python . in build_modules() function

 !!! Call stack:
 !!! * python_execute_function (/var/tmp/paludis/dev-python-
 pyrex-0.9.8.5-r1/temp/loadsaveenv:4050)
 !!! * distutils_src_compile (/var/tmp/paludis/dev-python-
 pyrex-0.9.8.5-r1/temp/loadsaveenv:1211)
 !!! * src_compile (/var/tmp/paludis/dev-python-
 pyrex-0.9.8.5-r1/temp/loadsaveenv:4375)
 !!! * ebuild_f_compile (/usr/libexec/paludis/2/src_compile.bash:56)
 !!! * ebuild_main (/usr/libexec/paludis/ebuild.bash:575)
 !!! * main (/usr/libexec/paludis/ebuild.bash:591)

 diefunc: making ebuild PID 7916 exit with error
 die trap: exiting with error.

 Install error:
 * In program paludis -i pyrex:
 * When performing install action from command line:
 * When executing install task:
 * When installing 'dev-python/pyrex-0.9.8.5-r1:0::gentoo':
 * When running an ebuild command on 'dev-
 python/pyrex-0.9.8.5-r1:0::gentoo':
 * Install error: Install failed for 'dev-
 python/pyrex-0.9.8.5-r1:0::gentoo'
 ==================================

 I have tried downgrading and recompiling paludis and several other
 packages which I thought were related to no avail. Below is a few more
 bits of information:

 # eselect python list
 Available python interpreters:
 [1] python2.5
 [2] python2.6 *
 [3] python3.1

 #python
 Python 2.6.2 (r262:71600, Aug 10 2009, 11:18:48)
 [GCC 4.3.4]

 #ls -l /usr/bin/python*
 lrwxrwxrwx 1 root root 14 2009-08-10 11:20 /usr/bin/python -> python-
 wrapper
 lrwxrwxrwx 1 root root 9 2009-08-10 11:20 /usr/bin/python2 -> python2.6
 -rwxr-xr-x 1 root root 6568 2009-07-23 14:33 /usr/bin/python2.5
 -rwxr-xr-x 1 root root 6560 2009-08-10 11:20 /usr/bin/python2.6
 lrwxrwxrwx 1 root root 9 2009-08-09 18:13 /usr/bin/python3 -> python3.1
 -rwxr-xr-x 1 root root 10728 2009-08-09 18:13 /usr/bin/python3.1

 It doesn't matter if I eselect 2.5 or 2.6, the problem persists. I even
 tried rebuilding "system", but that didn't help either. Instead, I found
 that these packages are broken as well:

 * sys-apps/file-5.03:0::gentoo: failure
 * dev-java/java-config-2.1.8-r1:2::gentoo: failure
 * sys-libs/db-4.7.25_p4:4.7::gentoo: failure
 * dev-python/pyrex-0.9.8.5-r1:0::gentoo: failure
 * dev-python/dbus-python-0.83.0-r1:0::gentoo: skipped (dependency '>=dev-
 python/pyrex-0.9.3-r2' unsatisfied)
 * dev-python/pycairo-1.8.6:0::gentoo: failure
 * sys-libs/cracklib-2.8.13-r1:0::gentoo:failure
 * dev-python/numpy-1.3.0:0::gentoo:failure
 * dev-libs/cyrus-sasl-2.1.23:2::gentoo: failure

 Here is the output of paludis --info:
 paludis --info dev-python/pyrex
 paludis at 1250098246: [WARNING e.ebuild.configuration.master_repository] In
 thread ID '27457':
   ... In program paludis --info dev-python/pyrex:
   ... When making environment from specification'':
   ... When loading paludisenvironment:
   ... When creating repository from file
 '/etc/paludis/repositories/kdetest.conf:
   ... When making ebuild repository from repo_file
 '/etc/paludis/repositories/kdetest.conf':
   ... Key 'master_repository' in '/etc/paludis/repositories/kdetest.conf'
 will override '/var/paludis/repositories/kdetest/metadata/layout.conf'.
 paludis 0.38.2
 Paludis build information:
     Compiler:
         CXX:      x86_64-pc-linux-gnu-g++ 4.3.4
         CXXFLAGS: -march=core2 -O2 -pipe
         LDFLAGS:  -Wl,-O1
         DATE:     2009-08-10T16:58:35-0700

     Libraries:
         C++ Library:           GNU libstdc++ 20090804

     Paths:
         DATADIR:               /usr/share
         LIBDIR:                /usr/lib64
         LIBEXECDIR:            /usr/libexec
         SYSCONFDIR:            /etc
         PYTHONINSTALLDIR:      /usr/lib64/python2.6/site-packages
         RUBYINSTALLDIR:        /usr/lib64/ruby/site_ruby/1.8/x86_64-linux

 System:
     Linux marius 2.6.30-gentoo-r4 #1 SMP PREEMPT Mon Jul 27 20:10:05 PDT
 2009 x86_64 Intel(R) Core(TM)2 Duo CPU E6550 @ 2.33GHz GenuineIntel
 GNU/Linux

 Reduced Privs:
     reduced_uid:               109
     reduced_uid->name:         paludisbuild
     reduced_uid->dir:          /var/tmp/paludis
     reduced_gid:               1001
     reduced_gid->name:         paludisbuild

 Environment:
     Format:                    paludis
     Config dir:                /etc/paludis
     World file:                /var/db/pkg/world

 Repository installed-virtuals:
     format:                    installed_virtuals
     root:                      /

 Repository virtuals:
     format:                    virtuals

 Repository gentoo:
     format:                    ebuild
     location:                  /usr/portage
     append_repository_name_to_write_cache: true
     binary_destination:        false
     binary_keywords:
     binary_uri_prefix:
     builddir:                  /var/tmp/paludis
     cache:                     /usr/portage/metadata/cache
     distdir:                   /usr/portage/distfiles
     eapi_when_unknown:         0
     eapi_when_unspecified:     0
     eclassdirs:                /usr/portage/eclass
     ignore_deprecated_profiles: false
     layout:                    traditional
     names_cache:               /var/cache/names
     newsdir:                   /usr/portage/metadata/news
     profile_eapi_when_unspecified: 0
     profiles:                  /etc/make.profile
     securitydir:               /usr/portage/metadata/glsa
     setsdir:                   /usr/portage/sets
     sync:                      rsync://rsync.gentoo.org/gentoo-portage
     sync_options:
     use_manifest:              use
     write_cache:               /var/cache/paludis/metadata

     Package information:
         app-admin/eselect-compiler: (none)
         app-shells/bash:       4.0_p28
         dev-java/java-config:  1.3.7-r1 2.1.8-r1
         dev-lang/python:       2.5.4-r3 2.6.2-r1 3.1
         dev-python/pycrypto:   2.0.1-r8
         dev-util/ccache:       2.4-r8
         dev-util/cmake:        2.6.4-r2
         dev-util/confcache:    (none)
         sys-apps/baselayout:   2.0.1
         sys-apps/openrc:       0.4.3-r3
         sys-apps/sandbox:      2.0
         sys-devel/autoconf:    2.13 2.63-r1
         sys-devel/automake:    1.10.2 1.11 1.5 1.6.3 1.7.9-r1 1.8.5-r3
 1.9.6-r2
         sys-devel/binutils:    2.19.1-r1
         sys-devel/gcc-config:  1.4.1
         sys-devel/libtool:     2.2.6a
         virtual/os-headers:    2.6.30-r1 (for sys-kernel/linux-
 headers::installed)

 Repository installed:
     format:                    vdb
     location:                  /var/db/pkg
     builddir:                  /var/tmp/paludis
     eapi_when_unknown:         0
     names_cache:               /var/cache/paludis/names
     provides_cache:            /var/cache/paludis/provides
     root:                      /

 Repository kde:
     format:                    ebuild
     location:                  /var/paludis/repositories/kdetest
     append_repository_name_to_write_cache: true
     binary_destination:        false
     binary_keywords:
     binary_uri_prefix:
     builddir:                  /var/tmp/paludis
     cache:                     /var/empty
     distdir:                   /usr/portage/distfiles
     eapi_when_unknown:         0
     eapi_when_unspecified:     0
     eclassdirs:                /usr/portage/eclass
 /var/paludis/repositories/kdetest/eclass
     ignore_deprecated_profiles: false
     layout:                    traditional
     master_repository:         gentoo
     names_cache:
 /var/paludis/repositories/kdetest/.cache/names
     newsdir:
 /var/paludis/repositories/kdetest/metadata/news
     profile_eapi_when_unspecified: 0
     profiles:                  /etc/make.profile
     securitydir:
 /var/paludis/repositories/kdetest/metadata/glsa
     setsdir:                   /var/paludis/repositories/kdetest/sets
     sync:                      git://git.overlays.gentoo.org/proj/kde.git
     sync_options:
     use_manifest:              use
     write_cache:               /var/cache/paludis/metadata

 Repository marius:
     format:                    ebuild
     location:                  /usr/local/portage/marius
     append_repository_name_to_write_cache: true
     binary_destination:        false
     binary_keywords:
     binary_uri_prefix:
     builddir:                  /var/tmp/paludis
     cache:                     /var/empty
     distdir:                   /usr/portage/distfiles
     eapi_when_unknown:         0
     eapi_when_unspecified:     0
     eclassdirs:                /usr/portage/eclass
 /usr/local/portage/marius/eclass
     ignore_deprecated_profiles: false
     layout:                    traditional
     master_repository:         gentoo
     names_cache:               /var/cache/names
     newsdir:                   /usr/local/portage/marius/metadata/news
     profile_eapi_when_unspecified: 0
     profiles:                  /etc/make.profile
     securitydir:               /usr/local/portage/marius/metadata/glsa
     setsdir:                   /usr/local/portage/marius/sets
     sync:
     sync_options:
     use_manifest:              use
     write_cache:               /var/cache/paludis/metadata

 Repository pioto-overlay:
     format:                    ebuild
     location:                  /var/paludis/repositories/pioto-overlay
     append_repository_name_to_write_cache: true
     binary_destination:        false
     binary_keywords:
     binary_uri_prefix:
     builddir:                  /var/tmp/paludis
     cache:                     /var/empty
     distdir:                   /usr/portage/distfiles
     eapi_when_unknown:         0
     eapi_when_unspecified:     0
     eclassdirs:                /usr/portage/eclass
 /var/paludis/repositories/pioto-overlay/eclass
     ignore_deprecated_profiles: false
     layout:                    traditional
     master_repository:         gentoo
     names_cache:               /var/paludis/repositories/pioto-
 overlay/.cache/names
     newsdir:                   /var/paludis/repositories/pioto-
 overlay/metadata/news
     profile_eapi_when_unspecified: 0
     profiles:                  /etc/make.profile
     securitydir:               /var/paludis/repositories/pioto-
 overlay/metadata/glsa
     setsdir:                   /var/paludis/repositories/pioto-
 overlay/sets
     sync:                      git://git.pioto.org/pioto-overlay.git
     sync_options:
     use_manifest:              use
     write_cache:               /var/cache/paludis/metadata

 Package dev-python/pyrex-0.9.8.5-r1:0::gentoo:

 paludis at 1250098246: [WARNING e.ebuild.userpriv_disabled] In thread ID
 '27457':
   ... In program paludis --info dev-python/pyrex:
   ... When handling query 'dev-python/pyrex':
   ... When infoing 'dev-python/pyrex-0.9.8.5-r1:0::gentoo':
   ... When checking permissions on '/var/tmp/paludis' for userpriv:
   ... Directory '/var/tmp/paludis' owned by group 'root', not
 'paludisbuild', so cannot enable userpriv
         >>> Running ebuild phase killold as paludisbuild:paludisbuild...
         >>> Starting builtin_killold
         >>> Done builtin_killold
         >>> Completed ebuild phase killold
         >>> Running ebuild phases initmisc infovars as
 paludisbuild:paludisbuild...
         >>> Starting builtin_initmisc
         >>> Done builtin_initmisc
         >>> Starting builtin_infovars
         ACCEPT_KEYWORDS=amd64
         CBUILD=x86_64-pc-linux-gnu
         CFLAGS=-march=core2 -O2 -pipe
         CHOST=x86_64-pc-linux-gnu
         CONFIG_PROTECT=
         CONFIG_PROTECT_MASK=
         CPPFLAGS=        CTARGET=
         CXXFLAGS=-march=core2 -O2 -pipe
         DISTDIR=/usr/portage/distfiles
         FEATURES=strict sfperms
         FFLAGS=
         GENTOO_MIRRORS=
         INSTALL_MASK=
         LANG=
         LC_ALL=C
         LDFLAGS=-Wl,-O1
         LINGUAS=en_US
         MAKEOPTS=-j5
         PORTAGE_COMPRESS=
         PORTAGE_COMPRESS_FLAGS=
         PORTAGE_CONFIGROOT=
         PORTAGE_RSYNC_EXTRA_OPTS=
         PORTAGE_RSYNC_OPTS=
         PORTAGE_TMPDIR=/var/tmp/paludis
         PORTDIR=/usr/portage
         PORTDIR_OVERLAY=
         SYNC=
         USE=amd64 alsa_cards_ali5451 alsa_cards_als4000 alsa_cards_atiixp
 alsa_cards_atiixp-modem alsa_cards_bt87x alsa_cards_ca0106
 alsa_cards_cmipci alsa_cards_emu10k1x alsa_cards_ens1370
 alsa_cards_ens1371 alsa_cards_es1938 alsa_cards_es1968 alsa_cards_fm801
 alsa_cards_hda-intel alsa_cards_intel8x0 alsa_cards_intel8x0m
 alsa_cards_maestro3 alsa_cards_trident alsa_cards_usb-audio
 alsa_cards_via82xx alsa_cards_via82xx-modem alsa_cards_ymfpci
 alsa_pcm_plugins_adpcm alsa_pcm_plugins_alaw alsa_pcm_plugins_asym
 alsa_pcm_plugins_copy alsa_pcm_plugins_dmix alsa_pcm_plugins_dshare
 alsa_pcm_plugins_dsnoop alsa_pcm_plugins_empty alsa_pcm_plugins_extplug
 alsa_pcm_plugins_file alsa_pcm_plugins_hooks alsa_pcm_plugins_iec958
 alsa_pcm_plugins_ioplug alsa_pcm_plugins_ladspa alsa_pcm_plugins_lfloat
 alsa_pcm_plugins_linear alsa_pcm_plugins_meter alsa_pcm_plugins_mmap_emul
 alsa_pcm_plugins_mulaw alsa_pcm_plugins_multi alsa_pcm_plugins_null
 alsa_pcm_plugins_plug alsa_pcm_plugins_rate alsa_pcm_plugins_route
 alsa_pcm_plugins_share alsa_pcm_plugins_shm alsa_pcm_plugins_softvol
 apache2_modules_actions apache2_modules_alias apache2_modules_auth_basic
 apache2_modules_authn_alias apache2_modules_authn_anon
 apache2_modules_authn_dbm apache2_modules_authn_default
 apache2_modules_authn_file apache2_modules_authz_dbm
 apache2_modules_authz_default apache2_modules_authz_groupfile
 apache2_modules_authz_host apache2_modules_authz_owner
 apache2_modules_authz_user apache2_modules_autoindex apache2_modules_cache
 apache2_modules_dav apache2_modules_dav_fs apache2_modules_dav_lock
 apache2_modules_deflate apache2_modules_dir apache2_modules_disk_cache
 apache2_modules_env apache2_modules_expires apache2_modules_ext_filter
 apache2_modules_file_cache apache2_modules_filter apache2_modules_headers
 apache2_modules_include apache2_modules_info apache2_modules_log_config
 apache2_modules_logio apache2_modules_mem_cache apache2_modules_mime
 apache2_modules_mime_magic apache2_modules_negotiation
 apache2_modules_rewrite apache2_modules_setenvif apache2_modules_speling
 apache2_modules_status apache2_modules_unique_id apache2_modules_userdir
 apache2_modules_usertrack apache2_modules_vhost_alias elibc_glibc
 input_devices_evdev input_devices_keyboard input_devices_mouse
 kernel_linux lcd_devices_bayrad lcd_devices_cfontz lcd_devices_cfontz633
 lcd_devices_glk lcd_devices_hd44780 lcd_devices_lb216 lcd_devices_lcdm001
 lcd_devices_mtxorb lcd_devices_ncurses lcd_devices_text linguas_en_US
 qemu_softmmu_targets_i386 qemu_softmmu_targets_x86_64
 qemu_user_targets_i386 qemu_user_targets_x86_64 userland_GNU
 video_cards_nvidia amd64
         >>> Done builtin_infovars
         >>> Completed ebuild phases initmisc infovars
         >>> Running ebuild phase tidyup as paludisbuild:paludisbuild...
         >>> Starting builtin_tidyup
         rm -fr /var/tmp/paludis/dev-python-pyrex-0.9.8.5-r1-info
         >>> Done builtin_tidyup
         >>> Completed ebuild phase tidyup

 Any help would be appreciated, thanks!

-- 
Ticket URL: <http://trac.pioto.org/paludis/ticket/782>
Paludis <http://paludis.pioto.org/>
Paludis, the Other Package Mangler


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